Package: tmbstan 1.2.1
tmbstan: MCMC Sampling from 'TMB' Model Object using 'Stan'
Enables all 'rstan' functionality for a 'TMB' model object, in particular MCMC sampling and chain visualization. Sampling can be performed with or without Laplace approximation for the random effects. This is demonstrated in Monnahan & Kristensen (2018) <doi:10.1371/journal.pone.0197954>.
Authors:
tmbstan_1.2.1.tar.gz
tmbstan_1.2.1.zip(r-4.7-x86_64)tmbstan_1.2.1.zip(r-4.7-arm64)tmbstan_1.2.1.zip(r-4.6-x86_64)tmbstan_1.2.1.zip(r-4.6-arm64)tmbstan_1.2.1.zip(r-4.5-x86_64)
tmbstan_1.2.1.tgz(r-4.6-x86_64)tmbstan_1.2.1.tgz(r-4.6-arm64)tmbstan_1.2.1.tgz(r-4.5-x86_64)tmbstan_1.2.1.tgz(r-4.5-arm64)
tmbstan_1.2.1.tar.gz(r-4.7-arm64)tmbstan_1.2.1.tar.gz(r-4.7-x86_64)tmbstan_1.2.1.tar.gz(r-4.6-arm64)tmbstan_1.2.1.tar.gz(r-4.6-x86_64)
tmbstan_1.2.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
tmbstan/json (API)
| # Install 'tmbstan' in R: |
| install.packages('tmbstan', repos = c('https://kaskr.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/kaskr/tmbstan/issues
Last updated from:38e20762ac. Checks:15 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 211 | ||
| linux-devel-x86_64 | OK | 268 | ||
| source / vignettes | OK | 377 | ||
| linux-release-arm64 | OK | 241 | ||
| linux-release-x86_64 | OK | 255 | ||
| macos-release-arm64 | OK | 201 | ||
| macos-release-x86_64 | OK | 650 | ||
| macos-oldrel-arm64 | OK | 136 | ||
| macos-oldrel-x86_64 | OK | 458 | ||
| windows-devel-arm64 | OK | 322 | ||
| windows-devel-x86_64 | OK | 262 | ||
| windows-release-arm64 | OK | 356 | ||
| windows-release-x86_64 | OK | 244 | ||
| windows-oldrel-x86_64 | OK | 299 | ||
| wasm-release | OK | 193 |
Exports:tmbstan
Dependencies:abindbackportsBHcallrcheckmateclicpp11descdistributionalfarvergenericsggplot2gluegridExtragtableinlineisobandlabelinglatticelifecycleloomagrittrMatrixmatrixStatsnumDerivotelpillarpkgbuildpkgconfigposteriorprocessxpsQuickJSRR6RColorBrewerRcppRcppEigenRcppParallelrlangrstanS7scalesStanHeaderstensorAtibbleTMButf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Draw MCMC samples from a TMB model object using Stan | tmbstan |
