Package: tmbstan 1.1.0

tmbstan: MCMC Sampling from 'TMB' Model Object using 'Stan'

Enables all 'rstan' functionality for a 'TMB' model object, in particular MCMC sampling and chain visualization. Sampling can be performed with or without Laplace approximation for the random effects. This is demonstrated in Monnahan & Kristensen (2018) <doi:10.1371/journal.pone.0197954>.

Authors:Kasper Kristensen [aut, cre]

tmbstan_1.1.0.tar.gz
tmbstan_1.1.0.zip(r-4.7)tmbstan_1.1.0.zip(r-4.6)tmbstan_1.1.0.zip(r-4.5)
tmbstan_1.1.0.tgz(r-4.6-x86_64)tmbstan_1.1.0.tgz(r-4.6-arm64)tmbstan_1.1.0.tgz(r-4.5-x86_64)tmbstan_1.1.0.tgz(r-4.5-arm64)
tmbstan_1.1.0.tar.gz(r-4.7-arm64)tmbstan_1.1.0.tar.gz(r-4.7-x86_64)tmbstan_1.1.0.tar.gz(r-4.6-arm64)tmbstan_1.1.0.tar.gz(r-4.6-x86_64)
manual.pdf |manual.html
card.svg |card.png
tmbstan/json (API)
NEWS

# Install 'tmbstan' in R:
install.packages('tmbstan', repos = c('https://kaskr.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kaskr/tmbstan/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

cpp

8.19 score 33 stars 2 packages 262 scripts 867 downloads 1 mentions 1 exports 49 dependencies

Last updated from:d2bc9bc25d. Checks:12 OK, 1 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK268
linux-devel-x86_64OK212
source / vignettesOK323
linux-release-arm64OK256
linux-release-x86_64OK260
macos-release-arm64OK186
macos-release-x86_64OK412
macos-oldrel-arm64OK210
macos-oldrel-x86_64OK420
windows-develOK308
windows-releaseOK292
windows-oldrelOK263
wasm-releaseFAIL150

Exports:tmbstan

Dependencies:abindbackportsBHcallrcheckmateclicpp11descdistributionalfarvergenericsggplot2gluegridExtragtableinlineisobandlabelinglatticelifecycleloomagrittrMatrixmatrixStatsnumDerivpillarpkgbuildpkgconfigposteriorprocessxpsQuickJSRR6RColorBrewerRcppRcppEigenRcppParallelrlangrstanS7scalesStanHeaderstensorAtibbleTMButf8vctrsviridisLitewithr

Sampling from TMB models using Stan

Rendered fromtmbstan.rmdusingknitr::rmarkdownon May 25 2026.

Last update: 2026-04-25
Started: 2026-04-25